Plotting

Plotting#

pl.barplot(data, name[, top, vertical, ...])

Plot barplots showing top scores.

pl.dotplot(df, x, y, c, s[, top, scale, ...])

Plot results of enrichment analysis as dots.

pl.filter_by_expr(adata[, group, lib_size, ...])

Plot to help determining the thresholds of the decoupler.pp.filter_by_expr function.

pl.filter_by_prop(adata[, min_prop, ...])

Plot to help determining the thresholds of the decoupler.pp.filter_by_prop function.

pl.filter_samples(adata[, groupby, log, ...])

Plot to assess the quality of the obtained pseudobulk samples from decoupler.pp.pseudobulk.

pl.leading_edge(df, net, stat, name[, cmap, ...])

Plot the running score of GSEA.

pl.network(net[, data, score, sources, ...])

Plot results of enrichment analysis as network.

pl.obsbar(adata, y[, hue, kw_barplot])

Plot adata.obs metadata as a grouped barplot.

pl.obsm(adata[, key, names, nvar, ...])

Plot metadata associations with features in adata.obsm.

pl.order_targets(adata, net, source, order)

Plot a source score, together with its targets readouts, along a continuous ordered process such as pseudotime.

pl.order(df[, mode, kw_order])

Plot features along a continuous, ordered process such as pseudotime.

pl.source_targets(data, net, x, y, name[, ...])

Plots target features of a given source as a scatter plot.

pl.volcano(data, x, y[, net, name, top, ...])

Plot logFC and p-values from a long formated data-frame.