Methods

Single methods

mt.aucell	Area Under the Curve for set enrichment within single cells (AUCell) [AGBM+17].
mt.gsea	Gene Set Enrichment Analysis (GSEA) [STM+05].
mt.gsva	Gene Set Variation Analysis (GSVA) [HanzelmannCG13].
mt.mdt	Multivariate Decision Trees (MDT) [BiMVSB+22].
mt.mlm	Multivariate Linear Model (MLM) [BiMVSB+22].
mt.ora	Over Representation Analysis (ORA) [Fis22].
mt.udt	Univariate Decision Tree (UDT) [BiMVSB+22].
mt.ulm	Univariate Linear Model (ULM) [BiMVSB+22].
mt.viper	Virtual Inference of Protein-activity by Enriched Regulon analysis (VIPER) [ASG+16].
mt.waggr	Weighted Aggregate (WAGGR) [BiMVSB+22].
mt.zscore	Z-score (ZSCORE) [YAS+21].

Multiple methods

mt.decouple(data, net[, methods, args, cons])	Runs multiple enrichment methods sequentially.
mt.consensus(result[, verbose])	Consensus score across methods.

Miscellaneous

mt.query_set(features, net[, alternative, ...])

Test overlap between a given feature set against a database of sets.