decoupler.ds.toy

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decoupler.ds.toy#

decoupler.ds.toy(nobs=30, nvar=20, bval=2.0, pstime=False, seed=42, verbose=False)#

Generate a toy adata and net for testing.

Parameters:

  • nobs (int (default: 30)) – Number of samples to generate.

  • nvar (int (default: 20)) – Number of features to generate.

  • bvar – Background value to set features not associated to any source.

  • pstime (bool (default: False)) – Whether to add simulated pseudotime.

  • seed (int (default: 42)) – Random seed to use.

  • verbose (bool (default: False)) – Whether to display progress messages and additional execution details.

Return type:

tuple[AnnData, DataFrame]

Returns:

AnnData and net examples.

Example

import decoupler as dc

adata, net = dc.ds.toy()
adata, net
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