Datasets

Bulk

ds.hsctgfb([verbose])	Hepatic stellate cells (HSC).
ds.knocktf([thr_fc, verbose])	KnockTF perturbation database.

Single-cell

ds.covid5k([verbose])	Peripheral blood mononuclear cells (PBMCs) from COVID-19 patients.
ds.erygast1k([verbose])	Erythroid lineage during gastrulation in mouse.
ds.pbmc3k([verbose])	10X peripheral blood mononuclear cells (PBMCs).

Spatial

ds.msvisium([verbose])

Multiple sclerosis slide.

Toy

ds.toy([nobs, nvar, bval, pstime, seed, verbose])	Generate a toy adata and net for testing.
ds.toy_bench([shuffle_r, seed, verbose])	Generate a toy adata and net for testing the benchmark pipeline.

Utils

ds.ensmbl_to_symbol(genes, organism)

Transforms ensembl gene ids to gene symbols.