Main
Installation
API
Preprocessing:
Methods:
Running multiple methods:
General utils:
AnnData utils:
Omnipath wrappers:
decoupler.show_resources
decoupler.get_resource
decoupler.get_progeny
decoupler.get_dorothea
decoupler.get_ksn_omnipath
decoupler.get_collectri
decoupler.translate_net
translate_net()
Plotting
Metrics
Benchmark utils
Benchmark
Other
Release notes
Reference
Vignettes
Usage
Cell type annotation from marker genes
Pathway activity inference
Transcription factor activity inference
Functional enrichment of biological terms
Pseudo-bulk functional analysis
Spatial functional analysis
Bulk functional analysis
Benchmarking pipeline
Conversion to other organisms
Licenses in OmniPath databases
decoupler
API
decoupler.translate_net
Edit on GitHub
decoupler.translate_net
decoupler.
translate_net
(
net
,
columns
=
['source',
'target',
'genesymbol']
,
target_organism
=
'mouse'
,
min_evidence
=
3
,
one_to_many
=
1
)