decoupler.get_resource

decoupler.get_resource(name, organism='human', license='academic', **kwargs)

Wrapper to access resources inside Omnipath.

This wrapper allows to easly query different prior knowledge resources. To check available resources run decoupler.show_resources(). For more information visit the official website for [Omnipath](https://omnipathdb.org/).

Parameters:

namestr

Name of the resource to query.

organismint | str

The organism of interest. By default human.

license: str

Which license to use, available options are: academic, commercial, or nonprofit. By default, is set to academic to retrieve all possible interactions.

kwargs

Passed to decoupler.translate_net.

Returns:

dfDataFrame

Dataframe in long format relating genes to biological entities.